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Development of a New General Click Chemistry and Applications in Bioconjugation: Part I: Rewiring Bacteria Cell Surfaces with Bio-Orthogonal Chemistry Part II: A Novel General Dialdehyde Click Chemistry for Primary Amine Conjugation

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dc.contributor.advisorYousaf, Muhammad N.
dc.creatorElahipanah, Sina
dc.date.accessioned2018-03-01T13:48:58Z
dc.date.available2018-03-01T13:48:58Z
dc.date.copyright2017-05-04
dc.date.issued2018-03-01
dc.date.updated2018-03-01T13:48:58Z
dc.degree.disciplineChemistry
dc.degree.levelDoctoral
dc.degree.namePhD - Doctor of Philosophy
dc.description.abstractThe ability to tailor cell surfaces with non-native molecules is critical to advance the study of cellular communication, cell behavior, and for next-generation therapeutics. There has been tremendous effort to tailor mammalian cell surfaces with organic functional groups; however, there are few reliable and non-invasive methods for re-wiring the bacterial cell surface. Current methods to re-engineer bacteria surfaces rely on complicated, slow, and often expensive molecular biology and metabolic manipulation methods with limited scope on the type of molecules installed onto the surface. In the first part of this report, we introduce a new straightforward method based on liposome fusion to re-engineer Gram-negative bacteria cell surface with bio-orthogonal groups that can subsequently be conjugated to a range of molecules (biomolecules, small molecules, probes, proteins) for further studies and programmed behavior of bacteria. This method is fast, efficient, inexpensive, and useful for installing a broad scope of ligands and biomolecules to Gram-negative bacteria surfaces. The development of methods to conjugate a range of molecules to primary amine functional groups have revolutionized the fields of chemistry, biology and material science. Due to its abundance, the primary amine is the most convenient functional group handle in molecules for ligation to other molecules for a broad range of applications that affect all scientific fields. Current conjugation methods with primary amines include the use of activated carboxylic acids, isothiocyanates, Michael addition type systems and reaction with ketones or aldehydes followed by in situ reductive amination. In the second part, we introduce a new traceless, high yield, fast; click chemistry method based on the rapid and efficient trapping of amine groups via a functionalized dialdehyde group. The click reaction occurs in mild conditions in organic solvents or aqueous media, proceeds in high yield. Moreover, no catalyst or activating group is required and the only by-product is water. The dialdehyde headgroup was used for applications in cell surface engineering and for tailoring surfaces for material science applications. We anticipate broad utility of the general dialdehyde click chemistry to primary amines in all areas of chemical research ranging from polymers, bioconjugation to material science and nanoscience
dc.identifier.urihttp://hdl.handle.net/10315/34274
dc.language.isoen
dc.rightsAuthor owns copyright, except where explicitly noted. Please contact the author directly with licensing requests.
dc.subjectBiochemistry
dc.subject.keywordsOrganic Chemistry
dc.subject.keywordsClick Chemistry
dc.subject.keywordsBioconjugation
dc.subject.keywordsAmine Conjugation
dc.subject.keywordsAmine Bioconjugation
dc.subject.keywordsPrimary Amine Bioconjugation
dc.subject.keywordsAmine Coupling
dc.subject.keywordsLysine Conjugation
dc.subject.keywordsLiposome Fusion
dc.subject.keywordsFunctionalized Liposome
dc.subject.keywordsOxime
dc.subject.keywordsHydroxylamine
dc.subject.keywordsKetone
dc.subject.keywordsHydrazone
dc.subject.keywordsTraceless Bioconjugation
dc.subject.keywordsEnamine formation
dc.subject.keywords1
dc.subject.keywords4 dihydropyridine
dc.subject.keywordsCell Surface Engineering
dc.subject.keywordsBioorthogonal Chemistry
dc.subject.keywordsBacteria
dc.subject.keywordsProtein Crosslinking
dc.subject.keywordsMaterial Science
dc.subject.keywordsCell Immobilization
dc.subject.keywordsDialdehyde
dc.subject.keywordsLipid
dc.subject.keywordsAntibody Drug Conjugate
dc.subject.keywordsMedicinal Chemistry
dc.subject.keywordsAdjuvants
dc.subject.keywordsPhysical Chemistry
dc.subject.keywordsSynthesis
dc.subject.keywordsCharacterization
dc.subject.keywordsSpectroscopy
dc.subject.keywordsNuclear Magnetic Resonance
dc.subject.keywordsMass Spectrometer
dc.subject.keywordsImmunology
dc.subject.keywordsBiotin
dc.subject.keywordsStreptavidin
dc.subject.keywordsAntibiotics
dc.subject.keywordsReversible Reaction
dc.subject.keywordsSurface Chemistry
dc.subject.keywordsOxidative Cleavage
dc.subject.keywordsConvergent Synthesis
dc.subject.keywordsAmide formation
dc.subject.keywordsPeptide Coupling
dc.subject.keywordsFluorescent Probe.
dc.titleDevelopment of a New General Click Chemistry and Applications in Bioconjugation: Part I: Rewiring Bacteria Cell Surfaces with Bio-Orthogonal Chemistry Part II: A Novel General Dialdehyde Click Chemistry for Primary Amine Conjugation
dc.typeElectronic Thesis or Dissertation

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