
#foreach i ( 1khv 1xr7 2cjq 2ckw 2ijd 3bso 3hkw 3uqs 4hdh 4k6m 4nyz 4wyw 4zpc 5f8h 5i62 5tfr )

foreach i ( 2xym )

partial_thread.macosclangrelease  -in:file:fasta kawf.fasta -in:file:alignment kawf_{$i}.grishin -in:file:template_pdb ../1_setup/{$i}.pdb -overwrite
#partial_thread.macosclangrelease  -in:file:fasta kawf.fasta -in:file:alignment kawn_{$i}.grishin -in:file:template_pdb ../1_setup/{$i}.pdb -overwrite

mv {$i}.pdb.pdb kawf_on_{$i}.pdb

#mv {$i}.pdb.pdb kawn_on_{$i}.pdb

end
